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Amino acids, proteins and DNA (A-level only)

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Question 2

Oxaliplatin, [Pt(dach)(ox)][\text{Pt(dach)(ox)}][Pt(dach)(ox)] (where dach\text{dach}dach is the bidentate neutral ligand trans-1,2-diaminocyclohexane and ox2−\text{ox}^{2-}ox2− is the oxalate bidentate ligand), is a platinum-based chemotherapeutic drug. In the cellular environment, it undergoes activation in a manner similar to cisplatin.

a.

Once inside cancerous cells, oxaliplatin slowly undergoes hydrolysis. In this process, the oxalate ligand is replaced by water molecules to form the active diaqua species, [Pt(dach)(H2O)2]2+[\text{Pt(dach)}(\text{H}_2\text{O})_2]^{2+}[Pt(dach)(H2​O)2​]2+. Write a balanced equation for this ligand substitution reaction.

[2]
b.

State the specific cellular process that is inhibited when the active diaqua platinum complex binds to DNA strands and forms intra-strand cross-links, eventually triggering apoptosis.

[1]
c.

Under isothermal conditions, the concentration of oxaliplatin was monitored over the course of the reaction. Describe how graphical methods can be used to analyze these concentration-time data to demonstrate that the hydrolysis is first order with respect to oxaliplatin.

[4]
d.

The rate constant kkk for this hydrolysis reaction was measured at several temperatures. The experimental data are presented in the table below:

Temperature T / KT\ /\ \text{K}T / K1T / K−1\frac{1}{T\ } /\ \text{K}^{-1}T 1​/ K−1Rate constant k / s−1k\ /\ \text{s}^{-1}k / s−1ln⁡k\ln klnk
2902902900.003450.003450.003457.29×10−107.29 \times 10^{-10}7.29×10−10−21.04-21.04−21.04
3003003000.003330.003330.003332.37×10−92.37 \times 10^{-9}2.37×10−9−19.86-19.86−19.86
3103103100.003230.003230.003237.10×10−97.10 \times 10^{-9}7.10×10−9−18.76-18.76−18.76
320320320[Value A]1.99×10−81.99 \times 10^{-8}1.99×10−8[Value B]
3303303300.003030.003030.003035.25×10−85.25 \times 10^{-8}5.25×10−8−16.76-16.76−16.76

Calculate the missing numbers [Value A] (to 3 significant figures) and [Value B] (to 2 decimal places).

[2]
e.

The temperature dependence of the rate constant can be expressed using the Arrhenius equation:

ln⁡k=−EaRT+ln⁡A \ln k = -\frac{E_a}{RT} + \ln A lnk=−RTEa​​+lnA

A student plotted the data and drew a line of best fit, selecting the following two coordinates from the line:

  • Point 1: (0.00350 K−1, −21.46)\left(0.00350\ \text{K}^{-1},\ -21.46\right)(0.00350 K−1, −21.46)
  • Point 2: (0.00295 K−1, −15.82)\left(0.00295\ \text{K}^{-1},\ -15.82\right)(0.00295 K−1, −15.82)

Determine the gradient of the line of best fit, and use it to calculate the activation energy, EaE_aEa​, in kJ mol−1\text{kJ mol}^{-1}kJ mol−1 for this reaction. (The gas constant R=8.31 J K−1 mol−1R = 8.31\ \text{J K}^{-1}\text{ mol}^{-1}R=8.31 J K−1 mol−1).

[4]

Amino acids, proteins and DNA (A-level only) Questions

  1. A Level
  2. /Chemistry
  3. /Amino acids, proteins and DNA (A-level only)